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Sixty-million-year-old grape seeds reveal how the death of the dinosaurs may have paved the way for grapes to spread

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Sixty-million-year-old grape seeds reveal how the death of the dinosaurs may have paved the way for grapes to spread


If you’ve ever snacked on raisins or enjoyed a glass of wine, you may, in part, have the extinction of the dinosaurs to thank for it. In a discovery described in the journal Nature Plants, researchers found fossil grape seeds that range from 60 to 19 million years old in Colombia, Panama, and Peru. One of these species represents the earliest known example of plants from the grape family in the Western Hemisphere. These fossil seeds help show how the grape family spread in the years following the death of the dinosaurs.

“These are the oldest grapes ever found in this part of the world, and they’re a few million years younger than the oldest ones ever found on the other side of the planet,” says Fabiany Herrera, an assistant curator of paleobotany at the Field Museum in Chicago’s Negaunee Integrative Research Center and the lead author of the Nature Plants paper. “This discovery is important because it shows that after the extinction of the dinosaurs, grapes really started to spread across the world.”

It’s rare for soft tissues like fruits to be preserved as fossils, so scientists’ understanding of ancient fruits often comes from the seeds, which are more likely to fossilize. The earliest known grape seed fossils were found in India and are 66 million years old. It’s not a coincidence that grapes appeared in the fossil record 66 million years ago-that’s around when a huge asteroid hit the Earth, triggering a massive extinction that altered the course of life on the planet. “We always think about the animals, the dinosaurs, because they were the biggest things to be affected, but the extinction event had a huge impact on plants too,” says Herrera. “The forest reset itself, in a way that changed the composition of the plants.”

Herrera and his colleagues hypothesize that the disappearance of the dinosaurs might have helped alter the forests. “Large animals, such as dinosaurs, are known to alter their surrounding ecosystems. We think that if there were large dinosaurs roaming through the forest, they were likely knocking down trees, effectively maintaining forests more open than they are today,” says Mónica Carvalho, a co-author of the paper and assistant curator at the University of Michigan’s Museum of Paleontology. But without large dinosaurs to prune them, some tropical forests, including those in South America, became more crowded, with layers of trees forming an understory and a canopy.

These new, dense forests provided an opportunity. “In the fossil record, we start to see more plants that use vines to climb up trees, like grapes, around this time,” says Herrera. The diversification of birds and mammals in the years following the mass extinction may have also aided grapes by spreading their seeds.

In 2013, Herrera’s PhD advisor and senior author of the new paper, Steven Manchester, published a paper describing the oldest known grape seed fossil, from India. While no fossil grapes had ever been found in South America, Herrera suspected that they might be there too.

“Grapes have an extensive fossil record that starts about 50 million years ago, so I wanted to discover one in South America, but it was like looking for a needle in a haystack,” says Herrera. “I’ve been looking for the oldest grape in the Western Hemisphere since I was an undergrad student.”

But in 2022, Herrera and his co-author Mónica Carvalho were conducting fieldwork in the Colombian Andes when a fossil caught Carvalho’s eye. “She looked at me and said, ‘Fabiany, a grape!’ And then I looked at it, I was like, ‘Oh my God.’ It was so exciting,” recalls Herrera. The fossil was in a 60-million-year-old rock, making it not only the first South American grape fossil, but among the world’s oldest grape fossils as well.

The fossil seed itself is tiny, but Herrera and Carvalho were able to identify it based on its particular shape, size, and other morphological features. Back in the lab, they conducted CT scans showing its internal structure that confirmed its identity. The team named the fossil Lithouva susmanii, “Susman’s stone grape,” in honor of Arthur T. Susman, a supporter of South American paleobotany at the Field Museum. “This new species is also important because it supports a South American origin of the group in which the common grape vine Vitis evolved,” says co-author Gregory Stull of the National Museum of Natural History.

The team conducted further fieldwork in South and Central America, and in the Nature Plants paper, Herrera and his co-authors ultimately described nine new species of fossil grapes from Colombia, Panama, and Perú, spanning from 60 to 19 million years old. These fossilized seeds not only tell the story of grapes’ spread across the Western Hemisphere, but also of the many extinctions and dispersals the grape family has undergone. The fossils are only distant relatives of the grapes native to the Western Hemisphere and a few, like the two species of Leea are only found in the Eastern Hemisphere today. Their places within the grape family tree indicate that their evolutionary journey has been a tumultuous one. “The fossil record tells us that grapes are a very resilient order. They’re a group that has suffered a lot of extinction in the Central and South American region, but they also managed to adapt and survive in other parts of the world,” says Herrera.

Given the mass extinction our planet is currently facing, Herrera says that studies like this one are valuable because they reveal patterns about how biodiversity crises play out. “But the other thing I like about these fossils is that these little tiny, humble seeds can tell us so much about the evolution of the forest,” says Herrera.

This study was authored by Fabiany Herrera (Field Museum), Mónica Carvalho (University of Michigan), Gregory Stull (National Museum of Natural History, Smithsonian Institution), Carlos Jarramillo (Smithsonian Tropical Research Institute), and Steven Manchester (Florida Museum of Natural History, University of Florida).



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Fresh wind blows from historical supernova

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Fresh wind blows from historical supernova


A mysterious remnant from a rare type of supernova recorded in 1181 has been explained for the first time. Two white dwarf stars collided, creating a temporary “guest star,” now labeled supernova (SN) 1181, which was recorded in historical documents in Japan and elsewhere in Asia. However, after the star dimmed, its location and structure remained a mystery until a team pinpointed its location in 2021. Now, through computer modeling and observational analysis, researchers have recreated the structure of the remnant white dwarf, a rare occurrence, explaining its double shock formation. They also discovered that high-speed stellar winds may have started blowing from its surface within just the past 20-30 years. This finding improves our understanding of the diversity of supernova explosions, and highlights the benefits of interdisciplinary research, combining history with modern astronomy to enable new discoveries about our galaxy.

It is the year 1181 and in Japan the Genpei War (1180-85) has recently begun. It will lead to a shift in political power from aristocratic families to the new military-based shogunate, which will establish itself in the coastal city of Kamakura near modern-day Tokyo. A record of this tumultuous period was compiled in a diary format in the Azuma Kagami. It chronicled not only people’s lives and key events (with varying accuracy), but other daily observations, including the appearance of a new star.

“There are many accounts of this temporary guest star in historical records from Japan, China and Korea. At its peak, the star’s brightness was comparable to Saturn’s. It remained visible to the naked eye for about 180 days, until it gradually dimmed out of sight. The remnant of the SN 1181 explosion is now very old, so it is dark and difficult to find,” explained lead author Takatoshi Ko, a doctoral student from the Department of Astronomy at the University of Tokyo.

The remnant of this guest star, labeled supernova remnant (SNR) 1181, was found to have been created when two extremely dense, Earth-sized stars, called white dwarfs, collided. This created a rare type of supernova, called a Type Iax supernova, which left behind a single, bright and fast-rotating white dwarf. Aided by observations on its position noted in the historical document, modern astrophysicists finally pinpointed its location in 2021 in a nebula towards the constellation Cassiopeia.

Due to its rare nature and location within our galaxy, SNR 1181 has been the subject of much observational research. This suggested that SNR 1181 is made up of two shock regions, an outer region and an inner one. In this new study, the research group analyzed the latest X-ray data to construct a theoretical computer model to explain these observations, and which has recreated the previously unexplained structure of this supernova remnant.

The main challenge was that according to conventional understanding, when two white dwarfs collide like this, they should explode and disappear. However, this merger left behind a white dwarf. The spinning white dwarf was expected to create a stellar wind (a fast-flowing stream of particles) immediately after its formation. However, what the researchers found was something else.

“If the wind had started blowing immediately after SNR 1181’s formation, we couldn’t reproduce the observed size of the inner shock region,” said Ko. “However, by treating the wind’s onset time as variable, we succeeded in explaining all of the observed features of SNR 1181 accurately and unraveling the mysterious properties of this high-speed wind. We were also able to simultaneously track the time evolution of each shock region, using numerical calculations.”

The team was very surprised to find that according to their calculations, the wind may have started blowing only very recently, within the past 20-30 years. They suggest this may indicate that the white dwarf has started to burn again, possibly due to some of the matter thrown out by the explosion witnessed in 1181 falling back to its surface, increasing its density and temperature over a threshold to restart burning.

To validate their computer model, the team is now preparing to further observe SNR 1181 using the Very Large Array (VLA) radio telescope based in central New Mexico state in the U.S., and the 8.2 meter-class Subaru Telescope in the U.S. state of Hawaii.

“The ability to determine the age of supernova remnants or the brightness at the time of their explosion through archaeological perspectives is a rare and invaluable asset to modern astronomy,” said Ko. “Such interdisciplinary research is both exciting and highlights the immense potential for combining diverse fields to uncover new dimensions of astronomical phenomena.”



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Scientists discover new T cells and genes related to immune disorders

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Scientists discover new T cells and genes related to immune disorders


Researchers led by Yasuhiro Murakawa at the RIKEN Center for Integrative Medical Sciences (IMS) and Kyoto University in Japan and IFOM ETS in Italy have discovered several rare types of helper T cells that are associated with immune disorders such as multiple sclerosis, rheumatoid arthritis, and even asthma. Published July 4 in Science, the discoveries were made possible by a newly developed technology they call ReapTEC, which identified genetic enhancers in rare T cell subtypes that are linked to specific immune disorders. The new T cell atlas is publicly available and should help in the development of new drug therapies for immune-mediated diseases.

Helper T cells are kind of white blood cell that make up a large part of the immune system. They recognize pathogens and regulate the immune response. Many immune-mediated disease are caused by abnormal T cell function. In autoimmune diseases like multiple sclerosis, they mistakenly attack parts of the body as if they were pathogens. In the case of allergies, T cells overreact to harmless substances in the environment like pollen. We know of several common T cells, but recent studies have shown that rare and specialized types of T cells exist, and they might be related to immune-mediated diseases.

Within all cells, including T cells, there are regions of DNA called “enhancers”. This DNA does not code for proteins. Instead, it codes for small pieces of RNA, and enhances the expression of other genes. Variations in T cell enhancer DNA therefore lead to differences in gene expression, and this can affect how T cells function. Some enhancers are bidirectional, which means that both strands of the DNA are used as templates for enhancer RNA. The researchers from several different laboratories at RIKEN IMS, as well as colleagues at other institutes, teamed up to develop the new ReapTEC technology and look for connections between bidirectional T cell enhancers and immune diseases.

After analyzing about a million human T cells, they found several groups of rare T cell types, accounting for less than 5% of the total. Applying ReapTEC to these cells identified almost 63,000 active bidirectional enhancers. To figure out if any of these enhancers are related to immune diseases, they turned to genome-wide association studies (GWAS), which have reported numerous genetic variants, called single-nucleotide polymorphisms, that are related to various immune diseases.

When the researchers combined the GWAS data with the results of their ReapTEC analysis, they found that genetic variants for immune-mediated diseases were often located within the bidirectional enhancer DNA of the rare T cells that they had identified. In contrast, genetic variants for neurological diseases did not show a similar pattern, meaning that the bidirectional enhancers in these rare T cells are related specifically to immune-mediated diseases.

Going even deeper into the data, the researchers were able to show that individual enhancers in certain rare T cells are related to specific immune diseases. Overall, among the 63,000 bidirectional enhancers, they were able to identify 606 that included single-nucleotide polymorphisms related to 18 immune-mediated diseases. Lastly, the researchers were able to identify some of the genes that are the targets of these disease-related enhancers. For example, when they activated an enhancer that contained a genetic variant related to inflammatory bowel disease, the resulting enhancer RNA triggered upregulation of the IL7R gene.

“In the short-term, we have developed a new genomics method that can be used by researchers around the world,” says Murakawa. “Using this method, we discovered new types of helper T cells as well as genes related to immune disorders. We hope that this knowledge will lead to a better understanding of the genetic mechanisms underlying human immune-mediated diseases.”

In the long-term, the researchers believe follow-up experiments will be able to identify new molecules that can be used to treat immune-mediated diseases.



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The dawn of the Antarctic ice sheets

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The dawn of the Antarctic ice sheets


In recent years global warming has left its mark on the Antarctic ice sheets. The “eternal” ice in Antarctica is melting faster than previously assumed, particularly in West Antarctica more than East Antarctica. The root for this could lie in its formation, as an international research team led by the Alfred Wegener Institute has now discovered: sediment samples from drill cores combined with complex climate and ice-sheet modelling show that permanent glaciation of Antarctica began around 34 million years ago — but did not encompass the entire continent as previously assumed, but rather was confined to the eastern region of the continent (East Antarctica). It was not until at least 7 million years later that ice was able to advance towards West Antarctic coasts. The results of the new study show how substantially differently East and West Antarctica react to external forcing, as the researchers describe in the journal Science.

Around 34 million years ago, our planet underwent one of the most fundamental climate shifts that still influences global climate conditions today: the transition from a greenhouse world, with no or very little accumulation of continental ice, to an icehouse world, with large permanently glaciated areas. During this time, the Antarctic ice sheet built up. How, when and, above all, where, was not yet known due to a lack of reliable data and samples from key regions, especially from West Antarctica, that document the changes in the past. Researchers from the Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research (AWI) have now been able to close this knowledge gap, together with colleagues from the British Antarctic Survey, Heidelberg University, Northumbria University (UK), and the MARUM — Center for Marine Environmental Sciences at the University of Bremen, in addition to collaborators from the Universities in Aachen, Leipzig, Hamburg, Bremen, and Kiel, as well as the University of Tasmania (Australia), Imperial College London (UK), Université de Fribourg (Switzerland), Universidad de Granada (Spain), Leicester University (UK), Texas A&M University (USA), Senckenberg am Meer, and the Federal Institute for Geosciences and Natural Resources in Hanover, Germany.

Based on a drill core that the researchers retrieved using the MARUM-MeBo70 seafloor drill rig in a location offshore the Pine Island and Thwaites glaciers on the Amundsen Sea coast of West Antarctica, they were able to establish the history of the dawn of the icy Antarctic continent for the first time. Surprisingly, no signs of the presence of ice can be found in this region during the first major phase of Antarctic glaciation. “This means that a large-scale, permanent first glaciation must have begun somewhere in East Antarctica,” says Dr Johann Klages, geologist at the AWI who led the research team. This is because West Antarctica remained ice-free during this first glacial maximum. At this time, it was still largely covered by dense broadleaf forests and a cool-temperate climate that prevented ice from forming in West Antarctica.

East and West Antarctica react very different to external conditions

In order to better understand where the first permanent ice formed in Antarctica, the AWI paleoclimate modelers combined the newly available data together with existing data on air and water temperatures and the occurrence of ice. “The simulation has supported the results of the geologists’ unique core,” says Prof Dr Gerrit Lohmann, paleoclimate modeler at the AWI. “This completely changes what we know about the first Antarctic glaciation.” According to the study, the basic climatic conditions for the formation of permanent ice only prevailed in the coastal regions of the East Antarctic Northern Victoria Land. Here, moist air masses reached the strongly rising Transantarctic Mountains — ideal conditions for permanent snow and subsequent formation of ice caps. From there, the ice sheet spread rapidly into the East Antarctic hinterland. However, it took some time before it reached West Antarctica: “It wasn’t until about seven million years later that conditions allowed for advance of an ice sheet to the West Antarctic coast,” explains Hanna Knahl, a paleoclimate modeler at the AWI. “Our results clearly show how cold it had to get before the ice could advance to cover West Antarctica that, at that time, was already below sea level in many parts.” What the investigations also impressively show is how different the two regions of the Antarctic ice sheet react to external influences and fundamental climatic changes. “Even a slight warming is enough to cause the ice in West Antarctica to melt again — and that’s exactly where we are right now,” adds Johann Klages.

The findings of the international research team are critical for understanding the extreme climate transition from the greenhouse climate to our current icehouse climate. Importantly, the study also provides new insight that allows climate models to simulate more accurately how permanently glaciated areas affect global climate dynamics, that is the interactions between ice, ocean and atmosphere. This is of crucial importance, as Johann Klages says: “Especially in light of the fact that we could be facing such a fundamental climate change again in the near future.”

Using new technology to gain unique insights

The researchers were able to close this knowledge gap with the help of a unique drill core that they retrieved during the expedition PS104 on the research vessel Polarstern in West Antarctica in 2017. The MARUM-MeBo70 drill rig developed at MARUM in Bremen was used for the first time in Antarctica. The seabed off the West Antarctic Pine Island and Thwaites glaciers is so hard that it was previously impossible to reach deep sediments using conventional drilling methods. The MARUM-MeBo70 has a rotating cutterhead, which made it possible to drill about 10 meters into the seabed and retrieve the samples.

The research project, and the Polarstern expedition PS104 in particular, was funded by the AWI, MARUM, the British Antarctic Survey, and the NERC UK-IODP Programme.



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