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Giant viruses found on Greenland ice sheet

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Giant viruses found on Greenland ice sheet


Every spring when the sun rises in the Arctic after months of darkness, life returns. The polar bears pop up from their winter lairs, the arctic tern soar back from their long journey south and the musk oxen wade north.

But the animals are not the only life being reawakened by the spring sun. Algae lying dormant on the ice starts blooming in spring blackening large areas of the ice.

When the ice blackens it’s ability to reflect the sun diminishes and this accelerates the melting of the ice. Increased melting exacerbates global warming.

But researchers might have found a way to control the snow algae growth — and maybe in the long run reduce some of the ice from melting. Living on the ice alongside the algae, postdoc Laura Perini from the Department of Environmental Science at Aarhus University and her colleagues, have found giant viruses.

She suspects that the viruses feed on the snow algae and could work as a natural control mechanism on the algae blooms.

“We don’t know a lot about the viruses, but I think they could be useful as a way of alleviating ice melting caused by algal blooms. How specific they are and how efficient it would be, we do not know yet. But by exploring them further, we hope to answer some of those questions,” she says.

Bigger than bacteria

Viruses are normally much smaller than bacteria. Regular viruses measure 20-200 nanometers in size, whereas a typical bacteria is 2-3 micrometers. In other words a normal virus is around 1000 times smaller than a bacteria.

That is not the case with giant viruses though.

Giant viruses grow to the size of 2.5 micrometers. That is bigger than most bacteria.

But the giant viruses are not only bigger in size. Their genome is much bigger than regular viruses. Bacteriophages — virus infecting bacteria — have between 100,000 and 200,000 letters in their genome. Giant viruses have around 2,500,000.

Never found on the ice before

Giant viruses were first discovered in 1981, when researchers found them in the ocean. These viruses had specialized in infecting green algae in the sea. Later, giant viruses were found in soil on land and even in humans.

But it’s the first time that giant viruses have been found living on the surface ice and snow dominated by microalgae, Laura Perini explains.

“We analyzed samples from dark ice, red snow and melting holes (cryoconite). In both the dark ice and red snow we found signatures of active giant viruses. And that is the first time they’ve been found on surface ice and snow containing a high abundance of pigmented microalgae.

“A few years ago everyone thought this part of the world to be barren and devoid of life. But today we know that several microorganisms live there — including the giant viruses.”

“There’s a whole ecosystem surrounding the algae. Besides bacteria, filamentous fungi and yeasts, there are protists eating the algae, different species of fungi parasitizing them and the giant viruses that we found, infecting them.

“In order to understand the biological controls acting on the algal blooms, we need to study these last three groups.”

Haven’t seen them with the naked eye

Even though the viruses are giant, they can’t be seen with the naked eye. Laura Perini hasn’t even seen them with a light microscope yet. But she hopes to do so in the future.

“The way we discovered the viruses was by analyzing all the DNA in the samples we took. By sifting through this huge dataset looking for specific marker genes, we found sequences that have high similarity to known giant viruses,” she explains.

To make sure that the viral DNA didn’t come from long dead microorganisms, but from living and active viruses, they also extracted all the mRNA from the sample.

When the sequences of the DNA that form genes are activated, they are transcribed into single stranded pieces called mRNA. These pieces work as recipes for building the proteins the virus needs. If they are present the virus is alive.

“In the total mRNA sequenced from the samples, we found the same markers as in the total DNA, so we know they have been transcribed. It means that the viruses are living and active on the ice,” she says.

DNA and RNA in viruses

At the center of the giant viruses is a cluster of DNA. That DNA contains all the genetic information or recipes needed to create proteins — the chemical compounds that are doing most of the work in the virus.

But in order to use those recipes, the virus needs to transcribe them from double-stranded DNA to single stranded mRNA.

Normal viruses can’t do that. Instead they have strands of RNA floating around in the cell waiting to be activated, when the virus infects an organism and hijacks its cellular production facilities.

Giant viruses can do that themselves which makes them very different from normal viruses.

Whereas DNA from dead viruses can be found in samples, mRNA is broken down much faster. mRNA is therefore an important marker of viral activity. In other words mRNA-recipes of certain proteins show that the viruses are alive and kicking.

Not sure exactly how they work

Because giant viruses are a relatively new discovery not a lot is known about them. In contrast to most other viruses they have a lot of active genes that enable them to repair, replicate, transcribe and translate DNA.

But why that is and exactly what they use it for is not known.

“Which hosts the giant viruses infect, we can’t link exactly. Some of them may be infecting protists while others attack the snow algae. We simply can’t be sure yet,” Laura Perini says.

She’s working hard on discovering more about the giant viruses and has more research coming out soon.

“We keep studying the giant viruses to learn more about their interactions and what is exactly is their role in the ecosystem. Later this year we’ll release another scientific with some more info on giant viruses infecting a cultivated microalgae thriving on the surface ice of the Greenland Ice Sheet,” she concludes.



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Early dark energy could resolve cosmology’s two biggest puzzles

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Giant viruses found on Greenland ice sheet


A new study by MIT physicists proposes that a mysterious force known as early dark energy could solve two of the biggest puzzles in cosmology and fill in some major gaps in our understanding of how the early universe evolved.

One puzzle in question is the “Hubble tension,” which refers to a mismatch in measurements of how fast the universe is expanding. The other involves observations of numerous early, bright galaxies that existed at a time when the early universe should have been much less populated.

Now, the MIT team has found that both puzzles could be resolved if the early universe had one extra, fleeting ingredient: early dark energy. Dark energy is an unknown form of energy that physicists suspect is driving the expansion of the universe today. Early dark energy is a similar, hypothetical phenomenon that may have made only a brief appearance, influencing the expansion of the universe in its first moments before disappearing entirely.

Some physicists have suspected that early dark energy could be the key to solving the Hubble tension, as the mysterious force could accelerate the early expansion of the universe by an amount that would resolve the measurement mismatch.

The MIT researchers have now found that early dark energy could also explain the baffling number of bright galaxies that astronomers have observed in the early universe. In their new study, reported in the Monthly Notices of the Royal Astronomical Society, the team modeled the formation of galaxies in the universe’s first few hundred million years. When they incorporated a dark energy component only in that earliest sliver of time, they found the number of galaxies that arose from the primordial environment bloomed to fit astronomers’ observations.

You have these two looming open-ended puzzles,” says study co-author Rohan Naidu, a postdoc in MIT’s Kavli Institute for Astrophysics and Space Research. “We find that in fact, early dark energy is a very elegant and sparse solution to two of the most pressing problems in cosmology.”

The study’s co-authors include lead author and Kavli postdoc Xuejian (Jacob) Shen, and MIT professor of physics Mark Vogelsberger, along with Michael Boylan-Kolchin at the University of Texas at Austin, and Sandro Tacchella at the University of Cambridge.

Big city lights

Based on standard cosmological and galaxy formation models, the universe should have taken its time spinning up the first galaxies. It would have taken billions of years for primordial gas to coalesce into galaxies as large and bright as the Milky Way.

But in 2023, NASA’s James Webb Space Telescope (JWST) made a startling observation. With an ability to peer farther back in time than any observatory to date, the telescope uncovered a surprising number of bright galaxies as large as the modern Milky Way within the first 500 million years, when the universe was just 3 percent of its current age.

“The bright galaxies that JWST saw would be like seeing a clustering of lights around big cities, whereas theory predicts something like the light around more rural settings like Yellowstone National Park,” Shen says. “And we don’t expect that clustering of light so early on.”

For physicists, the observations imply that there is either something fundamentally wrong with the physics underlying the models or a missing ingredient in the early universe that scientists have not accounted for. The MIT team explored the possibility of the latter, and whether the missing ingredient might be early dark energy.

Physicists have proposed that early dark energy is a sort of antigravitational force that is turned on only at very early times. This force would counteract gravity’s inward pull and accelerate the early expansion of the universe, in a way that would resolve the mismatch in measurements. Early dark energy, therefore, is considered the most likely solution to the Hubble tension.

Galaxy skeleton

The MIT team explored whether early dark energy could also be the key to explaining the unexpected population of large, bright galaxies detected by JWST. In their new study, the physicists considered how early dark energy might affect the early structure of the universe that gave rise to the first galaxies. They focused on the formation of dark matter halos — regions of space where gravity happens to be stronger, and where matter begins to accumulate.

“We believe that dark matter halos are the invisible skeleton of the universe,” Shen explains. “Dark matter structures form first, and then galaxies form within these structures. So, we expect the number of bright galaxies should be proportional to the number of big dark matter halos.”

The team developed an empirical framework for early galaxy formation, which predicts the number, luminosity, and size of galaxies that should form in the early universe, given some measures of “cosmological parameters.” Cosmological parameters are the basic ingredients, or mathematical terms, that describe the evolution of the universe.

Physicists have determined that there are at least six main cosmological parameters, one of which is the Hubble constant — a term that describes the universe’s rate of expansion. Other parameters describe density fluctuations in the primordial soup, immediately after the Big Bang, from which dark matter halos eventually form.

The MIT team reasoned that if early dark energy affects the universe’s early expansion rate, in a way that resolves the Hubble tension, then it could affect the balance of the other cosmological parameters, in a way that might increase the number of bright galaxies that appear at early times. To test their theory, they incorporated a model of early dark energy (the same one that happens to resolve the Hubble tension) into an empirical galaxy formation framework to see how the earliest dark matter structures evolve and give rise to the first galaxies.

“What we show is, the skeletal structure of the early universe is altered in a subtle way where the amplitude of fluctuations goes up, and you get bigger halos, and brighter galaxies that are in place at earlier times, more so than in our more vanilla models,” Naidu says. “It means things were more abundant, and more clustered in the early universe.”

“A priori, I would not have expected the abundance of JWST’s early bright galaxies to have anything to do with early dark energy, but their observation that EDE pushes cosmological parameters in a direction that boosts the early-galaxy abundance is interesting,” says Marc Kamionkowski, professor of theoretical physics at Johns Hopkins University, who was not involved with the study. “I think more work will need to be done to establish a link between early galaxies and EDE, but regardless of how things turn out, it’s a clever — and hopefully ultimately fruitful — thing to try.”

We demonstrated the potential of early dark energy as a unified solution to the two major issues faced by cosmology. This might be an evidence for its existence if the observational findings of JWST get further consolidated,” Vogelsberger concludes. “In the future, we can incorporate this into large cosmological simulations to see what detailed predictions we get.”

This research was supported, in part, by NASA and the National Science Foundation.



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Plant-derived secondary organic aerosols can act as mediators of plant-plant interactions

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A new study published in Science reveals that plant-derived secondary organic aerosols (SOAs) can act as mediators of plant-plant interactions. This research was conducted through the cooperation of chemical ecologists, plant ecophysiologists and atmospheric physicists at the University of Eastern Finland.

It is well known that plants release volatile organic compounds (VOCs) into the atmosphere when damaged by herbivores. These VOCs play a crucial role in plant-plant interactions, whereby undamaged plants may detect warning signals from their damaged neighbours and prepare their defences. “Reactive plant VOCs undergo oxidative chemical reactions, resulting in the formation of secondary organic aerosols (SOAs). We wondered whether the ecological functions mediated by VOCs persist after they are oxidated to form SOAs,” said Dr. Hao Yu, formerly a PhD student at UEF, but now at the University of Bern.

The study showed that Scots pine seedlings, when damaged by large pine weevils, release VOCs that activate defences in nearby plants of the same species. Interestingly, the biological activity persisted after VOCs were oxidized to form SOAs. The results indicated that the elemental composition and quantity of SOAs likely determines their biological functions.

“A key novelty of the study is the finding that plants adopt subtly different defence strategies when receiving signals as VOCs or as SOAs, yet they exhibit similar degrees of resistance to herbivore feeding,” said Professor James Blande, head of the Environmental Ecology Research Group. This observation opens up the possibility that plants have sophisticated sensing systems that enable them to tailor their defences to information derived from different types of chemical cue.

“Considering the formation rate of SOAs from their precursor VOCs, their longer lifetime compared to VOCs, and the atmospheric air mass transport, we expect that the ecologically effective distance for interactions mediated by SOAs is longer than that for plant interactions mediated by VOCs,” said Professor Annele Virtanen, head of the Aerosol Physics Research Group. This could be interpreted as plants being able to detect cues representing close versus distant threats from herbivores.

The study is expected to open up a whole new complex research area to environmental ecologists and their collaborators, which could lead to new insights on the chemical cues structuring interactions between plants.



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Folded or cut, this lithium-sulfur battery keeps going

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Most rechargeable batteries that power portable devices, such as toys, handheld vacuums and e-bikes, use lithium-ion technology. But these batteries can have short lifetimes and may catch fire when damaged. To address stability and safety issues, researchers reporting in ACS Energy Letters have designed a lithium-sulfur (Li-S) battery that features an improved iron sulfide cathode. One prototype remains highly stable over 300 charge-discharge cycles, and another provides power even after being folded or cut.

Sulfur has been suggested as a material for lithium-ion batteries because of its low cost and potential to hold more energy than lithium-metal oxides and other materials used in traditional ion-based versions. To make Li-S batteries stable at high temperatures, researchers have previously proposed using a carbonate-based electrolyte to separate the two electrodes (an iron sulfide cathode and a lithium metal-containing anode). However, as the sulfide in the cathode dissolves into the electrolyte, it forms an impenetrable precipitate, causing the cell to quickly lose capacity. Liping Wang and colleagues wondered if they could add a layer between the cathode and electrolyte to reduce this corrosion without reducing functionality and rechargeability.

The team coated iron sulfide cathodes in different polymers and found in initial electrochemical performance tests that polyacrylic acid (PAA) performed best, retaining the electrode’s discharge capacity after 300 charge-discharge cycles. Next, the researchers incorporated a PAA-coated iron sulfide cathode into a prototype battery design, which also included a carbonate-based electrolyte, a lithium metal foil as an ion source, and a graphite-based anode. They produced and then tested both pouch cell and coin cell battery prototypes.

After more than 100 charge-discharge cycles, Wang and colleagues observed no substantial capacity decay in the pouch cell. Additional experiments showed that the pouch cell still worked after being folded and cut in half. The coin cell retained 72% of its capacity after 300 charge-discharge cycles. They next applied the polymer coating to cathodes made from other metals, creating lithium-molybdenum and lithium-vanadium batteries. These cells also had stable capacity over 300 charge-discharge cycles. Overall, the results indicate that coated cathodes could produce not only safer Li-S batteries with long lifespans, but also efficient batteries with other metal sulfides, according to Wang’s team.

The authors acknowledge funding from the National Natural Science Foundation of China; the Natural Science Foundation of Sichuan, China; and the Beijing National Laboratory for Condensed Matter Physics.



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