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Shallow soda lakes show promise as cradles of life on Earth

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Shallow soda lakes show promise as cradles of life on Earth


Charles Darwin proposed that life could have emerged in a “warm little pond” with the right cocktail of chemicals and energy. A study from the University of Washington, published this month in Communications Earth & Environment, reports that a shallow “soda lake” in western Canada shows promise for matching those requirements. The findings provide new support that life could have emerged from lakes on the early Earth, roughly 4 billion years ago.

Scientists have known that under the right conditions, the complex molecules of life can emerge spontaneously. As recently fictionalized in the blockbuster hit “Lessons in Chemistry,” biological molecules can be coaxed to form from inorganic molecules. In fact, long after the real-life 1950s-era discovery made amino acids, the building blocks of proteins, more recent work has made the building blocks of RNA. But this next step requires extremely high phosphate concentrations.

Phosphate forms the “backbone” of RNA and DNA and is also a key component of cell membranes. The concentrations of phosphate required to form these biomolecules in the lab are hundreds to 1 million times higher than the levels normally found in rivers, lakes or in the ocean. This has been called the “phosphate problem” for the emergence of life — a problem that soda lakes may have solved.

“I think these soda lakes provide an answer to the phosphate problem,” said senior author David Catling, a UW professor of Earth and space sciences. “Our answer is hopeful: This environment should occur on the early Earth, and probably on other planets, because it’s just a natural outcome of the way that planetary surfaces are made and how water chemistry works.”

Soda lakes get their name from having high levels of dissolved sodium and carbonate, similar to dissolved baking soda. This occurs from the reactions between water and volcanic rocks beneath. Soda lakes can also have high levels of dissolved phosphate.

Previous UW research in 2019 found that chemical conditions for life to emerge could theoretically occur in soda lakes. The researchers combined chemical models with laboratory experiments to show that natural processes can theoretically concentrate phosphate in these lakes to levels up to 1 million times higher than in typical waters.

For the new study, the team set out to study such an environment on Earth. By coincidence, the most promising candidate was within driving distance. Tucked away at the end of a master’s thesis from the 1990s was the highest known natural phosphate level in the scientific literature at Last Chance Lake in inland British Columbia, Canada, about seven hours’ drive from Seattle.

The lake is about 1 foot deep and has murky water with fluctuating levels. It sits on federal land at the end of a dusty dirt road on the Cariboo Plateau, in British Columbia ranching country. The shallow lake meets the requirements for a soda lake: a lake above volcanic rock (in this case, basalt) combined with a dry, windy atmosphere that evaporates incoming water to keep water levels low and concentrates dissolved compounds within the lake.

Analysis published in the new paper suggests soda lakes are a strong candidate for the emergence of life on Earth. They also could be a candidate for life on other planets.

“We studied a natural environment that should be common throughout the solar system. Volcanic rocks are prevalent on the surfaces of planets, so this same water chemistry could have occurred not just on early Earth, but also on early Mars and early Venus, if liquid water was present,” said lead author Sebastian Haas, a UW postdoctoral researcher in Earth and space sciences.

The UW team visited Last Chance Lake three times from 2021 to 2022. They collected observations in early winter, when the lake was covered in ice; in early summer, when rain-fed springs and snowmelt-fed streams put water at its highest; and in late summer when the lake had almost completely dried up.

“You have this seemingly dry salt flat, but there are nooks and crannies. And between the salt and the sediment there are little pockets of water that are really high in dissolved phosphate,” Haas said. “What we wanted to understand was why and when could this happen on the ancient Earth, in order to provide a cradle for the origin of life.”

On all three visits the team collected samples of water, lake sediment and salt crust to understand the lake’s chemistry.

In most lakes the dissolved phosphate quickly combines with calcium to form calcium phosphate, the insoluble material that makes up our tooth enamel. This removes phosphate from the water. But in Last Chance Lake, calcium combines with plentiful carbonate as well as magnesium to form dolomite, the same mineral that forms picturesque mountain ranges. This reaction was predicted by the previous modeling work and confirmed when dolomite was plentiful in Last Chance Lake’s sediments. When calcium turns into dolomite and does not remain in the water, the phosphate lacks a bonding partner — and so its concentration rises.

“This study adds to growing evidence that evaporative soda lakes are environments meeting the requirements for origin-of-life chemistry by accumulating key ingredients at high concentrations,” Catling said.

The study also compared Last Chance Lake with Goodenough Lake, a roughly 3-foot-deep lake with clearer water and different chemistry just a two-minute walk away, to learn what makes Last Chance Lake unique. The researchers wondered why life, present in all modern lakes at some level, was not using up the phosphate in Last Chance Lake.

Goodenough Lake has mats of cyanobacteria that extract or “fix” nitrogen gas from the air. Cyanobacteria, like all other lifeforms, also require phosphate — and its growing population consumes some of that lake water’s phosphate supply. But Last Chance Lake is so salty that it inhibits living things that do the energy-intensive work of fixing atmospheric nitrogen. Last Chance Lake harbors some algae but has insufficient available nitrogen to host more life, allowing phosphate to accumulate. This also makes it a better analog for a lifeless Earth.

“These new findings will help inform origin-of-life researchers who are either replicating these reactions in the lab or are looking for potentially habitable environments on other planets,” Catling said.

The research was funded by the Simons Foundation. The other co-author is Kimberly Poppy Sinclair, a UW graduate student in Earth and space sciences. Graduate students with the UW Astrobiology Program also assisted with sample collection.



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‘Dancing molecules’ heal cartilage damage

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Shallow soda lakes show promise as cradles of life on Earth


In November 2021, Northwestern University researchers introduced an injectable new therapy, which harnessed fast-moving “dancing molecules,” to repair tissues and reverse paralysis after severe spinal cord injuries.

Now, the same research group has applied the therapeutic strategy to damaged human cartilage cells. In the new study, the treatment activated the gene expression necessary to regenerate cartilage within just four hours. And, after only three days, the human cells produced protein components needed for cartilage regeneration.

The researchers also found that, as the molecular motion increased, the treatment’s effectiveness also increased. In other words, the molecules’ “dancing” motions were crucial for triggering the cartilage growth process.

The study was published today (July 26) in the Journal of the American Chemical Society.

“When we first observed therapeutic effects of dancing molecules, we did not see any reason why it should only apply to the spinal cord,” said Northwestern’s Samuel I. Stupp, who led the study. “Now, we observe the effects in two cell types that are completely disconnected from one another — cartilage cells in our joints and neurons in our brain and spinal cord. This makes me more confident that we might have discovered a universal phenomenon. It could apply to many other tissues.”

An expert in regenerative nanomedicine, Stupp is Board of Trustees Professor of Materials Science and Engineering, Chemistry, Medicine and Biomedical Engineering at Northwestern, where he is founding director of the Simpson Querrey Institute for BioNanotechnology and its affiliated center, the Center for Regenerative Nanomedicine. Stupp has appointments in the McCormick School of Engineering, Weinberg College of Arts and Sciences and Feinberg School of Medicine. Shelby Yuan, a graduate student in the Stupp laboratory, was primary author of the study.

Big problem, few solutions

As of 2019, nearly 530 million people around the globe were living with osteoarthritis, according to the World Health Organization. A degenerative disease in which tissues in joints break down over time, osteoarthritis is a common health problem and leading cause of disability.

In patients with severe osteoarthritis, cartilage can wear so thin that joints essentially transform into bone on bone — without a cushion between. Not only is this incredibly painful, patients’ joints also can no longer properly function. At that point, the only effective treatment is a joint replacement surgery, which is expensive and invasive.

“Current treatments aim to slow disease progression or postpone inevitable joint replacement,” Stupp said. “There are no regenerative options because humans do not have an inherent capacity to regenerate cartilage in adulthood.”

What are ‘dancing molecules’?

Stupp and his team posited that “dancing molecules” might encourage the stubborn tissue to regenerate. Previously invented in Stupp’s laboratory, dancing molecules are assemblies that form synthetic nanofibers comprising tens to hundreds of thousands of molecules with potent signals for cells. By tuning their collective motions through their chemical structure, Stupp discovered the moving molecules could rapidly find and properly engage with cellular receptors, which also are in constant motion and extremely crowded on cell membranes.

Once inside the body, the nanofibers mimic the extracellular matrix of the surrounding tissue. By matching the matrix’s structure, mimicking the motion of biological molecules and incorporating bioactive signals for the receptors, the synthetic materials are able to communicate with cells.

“Cellular receptors constantly move around,” Stupp said. “By making our molecules move, ‘dance’ or even leap temporarily out of these structures, known as supramolecular polymers, they are able to connect more effectively with receptors.”

Motion matters

In the new study, Stupp and his team looked to the receptors for a specific protein critical for cartilage formation and maintenance. To target this receptor, the team developed a new circular peptide that mimics the bioactive signal of the protein, which is called transforming growth factor beta-1 (TGFb-1).

Then, the researchers incorporated this peptide into two different molecules that interact to form supramolecular polymers in water, each with the same ability to mimic TGFb-1. The researchers designed one supramolecular polymer with a special structure that enabled its molecules to move more freely within the large assemblies. The other supramolecular polymer, however, restricted molecular movement.

“We wanted to modify the structure in order to compare two systems that differ in the extent of their motion,” Stupp said. “The intensity of supramolecular motion in one is much greater than the motion in the other one.”

Although both polymers mimicked the signal to activate the TGFb-1 receptor, the polymer with rapidly moving molecules was much more effective. In some ways, they were even more effective than the protein that activates the TGFb-1 receptor in nature.

“After three days, the human cells exposed to the long assemblies of more mobile molecules produced greater amounts of the protein components necessary for cartilage regeneration,” Stupp said. “For the production of one of the components in cartilage matrix, known as collagen II, the dancing molecules containing the cyclic peptide that activates the TGF-beta1 receptor were even more effective than the natural protein that has this function in biological systems.”

What’s next?

Stupp’s team is currently testing these systems in animal studies and adding additional signals to create highly bioactive therapies.

“With the success of the study in human cartilage cells, we predict that cartilage regeneration will be greatly enhanced when used in highly translational pre-clinical models,” Stupp said. “It should develop into a novel bioactive material for regeneration of cartilage tissue in joints.”

Stupp’s lab is also testing the ability of dancing molecules to regenerate bone — and already has promising early results, which likely will be published later this year. Simultaneously, he is testing the molecules in human organoids to accelerate the process of discovering and optimizing therapeutic materials.

Stupp’s team also continues to build its case to the Food and Drug Administration, aiming to gain approval for clinical trials to test the therapy for spinal cord repair.

“We are beginning to see the tremendous breadth of conditions that this fundamental discovery on ‘dancing molecules’ could apply to,” Stupp said. “Controlling supramolecular motion through chemical design appears to be a powerful tool to increase efficacy for a range of regenerative therapies.”



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New understanding of fly behavior has potential application in robotics, public safety

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Why do flies buzz around in circles when the air is still? And why does it matter?

In a paper published online July 26, 2024 by the scientific journal Current Biology, University of Nevada, Reno Assistant Professor Floris van Breugel and Postdoctoral Researcher S. David Stupski respond to this up-until-now unanswered question. And that answer could hold a key to public safety — specifically, how to better train robotic systems to track chemical leaks.

“We don’t currently have robotic systems to track odor or chemical plumes,” van Breugel said. “We don’t know how to efficiently find the source of a wind-borne chemical. But insects are remarkably good at tracking chemical plumes, and if we really understood how they do it, maybe we could train inexpensive drones to use a similar process to find the source of chemicals and chemical leaks.”

A fundamental challenge in understanding how insects track chemical plumes — basically, how does the fly find the banana in your kitchen? — is that wind and odors can’t be independently manipulated.

To address this challenge, van Breugel and Stupski used a new approach that makes it possible to remotely control neurons — specifically the “smell” neurons — on the antennae of flying fruit flies by genetically introducing light-sensitive proteins, an approach called optogenetics. These experiments, part of a $450,000 project funded through the Air Force Office of Scientific Research, made it possible to give flies identical virtual smell experiences in different wind conditions.

What van Breugel and Stupski wanted to know: how do flies find an odor when there’s no wind to carry it? This is, after all, likely the wind experience of a fly looking for a banana in your kitchen. The answer is in the Current Biology article, “Wind Gates Olfaction Driven Search States in Free Flight.” The print version will appear in the Sept. 9 issue.

Flies use environmental cues to detect and respond to air currents and wind direction to find their food sources, according to van Breugel. In the presence of wind, those cues trigger an automatic “cast and surge” behavior, in which the fly surges into the wind after encountering a chemical plume (indicating food) and then casts — moves side to side — when it loses the scent. Cast-and-surge behavior long has been understood by scientists but, according to van Breugel, it was fundamentally unknown how insects searched for a scent in still air.

Through their work, van Breugel and Stupski uncovered another automatic behavior, sink and circle, which involves lowering altitude and repetitive, rapid turns in a consistent direction. Flies perform this innate movement consistently and repetitively, even more so than cast-and-surge behavior.

According to van Breugel, the most exciting aspect of this discovery is that it shows flying flies are clearly able to assess the conditions of the wind — its presence, and direction — before deploying a strategy that works well under these conditions. The fact that they can do this is actually quite surprising — can you tell if there is a gentle breeze if you stick your head out of the window of a moving car? Flies aren’t just reacting to an odor with the same preprogrammed response every time like a simple robot, they are responding in context-appropriate manner. This knowledge potentially could be applied to train more sophisticated algorithms for scent-detecting drones to find the source of chemical leaks.

So, the next time you try to swat a fly in your home, consider the fact that flies might actually be a little more aware of some of their natural surroundings than you are. And maybe just open a window to let it out.



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New drug shows promise in clearing HIV from brain

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An experimental drug originally developed to treat cancer may help clear HIV from infected cells in the brain, according to a new Tulane University study.

For the first time, researchers at Tulane National Primate Research Center found that a cancer drug significantly reduced levels of SIV, the nonhuman primate equivalent of HIV, in the brain by targeting and depleting certain immune cells that harbor the virus.

Published in the journal Brain, this discovery marks a significant step toward eliminating HIV from hard-to-reach reservoirs where the virus evades otherwise effective treatment.

“This research is an important step in tackling brain-related issues caused by HIV, which still affect people even when they are on effective HIV medication,” said lead study author Woong-Ki Kim, PhD, associate director for research at Tulane National Primate Research Center. “By specifically targeting the infected cells in the brain, we may be able to clear the virus from these hidden areas, which has been a major challenge in HIV treatment.”

Antiretroviral therapy (ART) is an essential component of successful HIV treatment, maintaining the virus at undetectable levels in the blood and transforming HIV from a terminal illness into a manageable condition. However, ART does not completely eradicate HIV, necessitating lifelong treatment. The virus persists in “viral reservoirs” in the brain, liver, and lymph nodes, where it remains out of reach of ART.

The brain has been a particularly challenging area for treatment due to the blood-brain barrier — a protective membrane that shields it from harmful substances but also blocks treatments, allowing the virus to persist. In addition, cells in the brain known as macrophages are extremely long-lived, making them difficult to eradicate once they become infected.

Infection of macrophages is thought to contribute to neurocognitive dysfunction, experienced by nearly half of those living with HIV. Eradicating the virus from the brain is critical for comprehensive HIV treatment and could significantly improve the quality of life for those with HIV-related neurocognitive problems.

Researchers focused on macrophages, a type of white blood cell that harbors HIV in the brain. By using a small molecule inhibitor to block a receptor that increases in HIV-infected macrophages, the team successfully reduced the viral load in the brain. This approach essentially cleared the virus from brain tissue, providing a potential new treatment avenue for HIV.

The small molecule inhibitor used, BLZ945, has previously been studied for therapeutic use in amyotrophic lateral sclerosis (ALS) and brain cancer, but never before in the context of clearing HIV from the brain.

The study, which took place at the Tulane National Primate Research Center, utilized three groups to model human HIV infection and treatment: an untreated control group, and two groups treated with either a low or high dose of the small molecule inhibitor for 30 days. The high-dose treatment lead to a notable reduction in cells expressing HIV receptor sites, as well as a 95-99% decrease in viral DNA loads in the brain .

In addition to reducing viral loads, the treatment did not significantly impact microglia, the brain’s resident immune cells, which are essential for maintaining a healthy neuroimmune environment. It also did not show signs of liver toxicity at the doses tested.

The next step for the research team is to test this therapy in conjunction with ART to assess its efficacy in a combined treatment approach. This could pave the way for more comprehensive strategies to eradicate HIV from the body entirely.

This research was funded by the National Institutes of Health, including grants from the National Institute of Mental Health and the National Institute of Neurological Disorders and Stroke, and was supported with resources from the Tulane National Primate Research Center base grant of the National Institutes of Health, P51 OD011104.



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